SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000355_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

G (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	21	0.024
Yoruba	Africa	22	0.068

Bedouin	Middle East	45	0.022

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.194
Middle East	0.191	0.007
Europe	0.007	0.062	0.000
Central-South Asia	0.007	0.028	0.000	0.000
East Asia	0.004	0.000	0.000	0.000	0.000
Oceania	0.006	0.001	0.000	0.000	0.000	0.000
America	0.005	0.001	0.000	0.000	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.682
Middle East	0.408	0.348
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	0.997	0.967	1.000	1.000	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000355

Variant release

2.0

External ID

rs8179167 (dbSNP)

Sequence

SEQ00000004_2.0

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