SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000356_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

A (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Kalash	Central-South Asia	16	0.031

Han	East Asia	23	0.022
Japanese	East Asia	19	0.079
Naxi	East Asia	5	0.100
She	East Asia	6	0.083

Basque	Europe	15	0.033
Bergamo	Europe	11	0.091
French	Europe	22	0.023

Druze	Middle East	30	0.017

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.006
Europe	0.010	0.024	0.020
Central-South Asia	0.001	0.004	0.014	0.003
East Asia	0.017	0.038	0.020	0.022	0.020
Oceania	0.000	0.000	0.012	0.001	0.021	0.000
America	0.000	0.000	0.011	0.001	0.019	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	0.426
Europe	1.000	0.568	0.019
Central-South Asia	1.000	1.000	0.827	1.000
East Asia	1.000	0.973	0.981	1.000	0.141
Oceania	1.000	0.999	0.748	1.000	0.975	0.999
America	1.000	1.000	0.951	1.000	0.998	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000356

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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