SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000370_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

A (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Surui	America	8	0.062

Makrani	Central-South Asia	22	0.023

Dai	East Asia	7	0.071
Lahu	East Asia	6	0.083
Mongola	East Asia	9	0.056
Naxi	East Asia	7	0.071

French	Europe	26	0.019
Sardinian	Europe	25	0.020

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.001	0.004	0.001
Central-South Asia	0.000	0.002	0.002	0.002
East Asia	0.014	0.042	0.016	0.022	0.023
Oceania	0.000	0.000	0.000	0.000	0.018	0.000
America	0.009	0.029	0.010	0.015	0.020	0.012	0.020

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	0.999	0.994
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	0.995	1.000	1.000	0.058
Oceania	1.000	1.000	1.000	1.000	0.999	0.999
America	1.000	0.986	0.938	0.997	0.959	0.969	0.460

Low P-value

High P-value

VariantID

SNP00000370

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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