SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000372_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

G (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	22	0.023
Mandenka	Africa	15	0.033

Brahui	Central-South Asia	20	0.025

Japanese	East Asia	21	0.024

French	Europe	24	0.021

Mozabite	Middle East	27	0.019
Palestinian	Middle East	45	0.011

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.002
Middle East	0.371	0.658
Europe	0.094	0.246	0.071
Central-South Asia	0.084	0.301	0.055	0.029
East Asia	0.046	0.031	0.053	0.054	0.040
Oceania	0.003	0.000	0.000	0.001	0.000	0.000
America	0.002	0.000	0.000	0.001	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	0.000	0.001
Europe	0.999	0.153	0.999
Central-South Asia	0.997	0.027	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	0.999	0.999	1.000	1.000	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000372

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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