SelenoDB
Release 2.0
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Variant Report for SNP00000377_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantG (A in the Reference genome)
State Derived (A in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 23 0.239
Mandenka Africa 15 0.433
Mbuti Africa 13 0.154
N_Bantu Africa 11 0.455
San Africa 5 0.400
SE_Bantu Africa 5 0.300
SW_Bantu Africa 3 0.333
Yoruba Africa 22 0.295
Maya America 20 0.050
Balochi Central-South Asia 23 0.370
Brahui Central-South Asia 20 0.450
Burusho Central-South Asia 23 0.239
Hazara Central-South Asia 21 0.381
Kalash Central-South Asia 22 0.364
Makrani Central-South Asia 23 0.435
Pathan Central-South Asia 23 0.304
Sindhi Central-South Asia 20 0.275
Uygur Central-South Asia 10 0.350
Dai East Asia 9 0.111
Daur East Asia 10 0.250
Han East Asia 34 0.029
Hezhen East Asia 8 0.125
Japanese East Asia 25 0.040
Lahu East Asia 8 0.188
Naxi East Asia 8 0.062
Oroqen East Asia 7 0.214
Tu East Asia 8 0.062
Tujia East Asia 10 0.050
Xibo East Asia 8 0.062
Yakut East Asia 25 0.260
Yizu East Asia 10 0.200
Adygei Europe 16 0.281
Basque Europe 23 0.457
Bergamo Europe 12 0.250
French Europe 27 0.370
Orcadian Europe 15 0.233
Russian Europe 23 0.304
Sardinian Europe 27 0.278
Tuscan Europe 8 0.188
Bedouin Middle East 45 0.278
Druze Middle East 39 0.462
Mozabite Middle East 29 0.310
Palestinian Middle East 45 0.300
Melanesian Oceania 14 0.071
Papuan Oceania 16 0.188
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.031
Middle East0.0210.025
Europe0.0220.0200.020
Central-South Asia0.0200.0140.0190.012
East Asia0.1800.1380.1260.1650.245
Oceania0.1200.1020.0810.1220.1250.041
America0.3120.2240.2210.2690.1140.0780.190

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.191
Middle East0.7740.151
Europe0.7470.0520.022
Central-South Asia0.9700.0330.0000.180
East Asia0.0000.0000.0000.0000.000
Oceania0.0000.0000.0000.0000.0010.081
America0.0000.0000.0000.0000.0000.0010.093

Low P-value

High P-value

VariantIDSNP00000377
Variant release2.0
External IDrs3811699 (dbSNP)
SequenceSEQ00000004_2.0
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