SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000381_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

G (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	23	0.196
Mbuti	Africa	13	0.192
N_Bantu	Africa	10	0.050
SW_Bantu	Africa	3	0.167

Palestinian	Middle East	45	0.011

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.218
Middle East	0.262	0.494
Europe	0.101	0.154	0.000
Central-South Asia	0.102	0.164	0.000	0.000
East Asia	0.074	0.000	0.000	0.000	0.000
Oceania	0.092	0.000	0.000	0.000	0.000	0.000
America	0.074	0.000	0.000	0.000	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.012
Europe	0.038	0.972	1.000
Central-South Asia	0.047	0.993	1.000	1.000
East Asia	0.012	1.000	1.000	1.000	1.000
Oceania	0.155	1.000	1.000	1.000	1.000	0.999
America	0.109	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000381

Variant release

2.0

External ID

rs72554687 (dbSNP)

Sequence

SEQ00000004_2.0

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