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Release 2.0
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Variant Report for SNP00000383_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantG (A in the Reference genome)
State Derived (A in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 23 0.804
Mandenka Africa 16 0.906
Mbuti Africa 13 0.462
N_Bantu Africa 11 0.682
San Africa 5 0.500
SE_Bantu Africa 5 0.700
SW_Bantu Africa 3 0.833
Yoruba Africa 22 0.659
Colombian America 4 1.000
Karitiana America 14 1.000
Maya America 19 0.974
Pima America 14 1.000
Surui America 8 1.000
Balochi Central-South Asia 23 0.826
Brahui Central-South Asia 21 0.881
Burusho Central-South Asia 23 0.935
Hazara Central-South Asia 22 0.886
Kalash Central-South Asia 20 0.900
Makrani Central-South Asia 24 0.938
Pathan Central-South Asia 24 0.833
Sindhi Central-South Asia 20 0.850
Uygur Central-South Asia 10 0.850
Cambodian East Asia 9 0.833
Dai East Asia 8 1.000
Daur East Asia 8 1.000
Han East Asia 38 1.000
Hezhen East Asia 8 1.000
Japanese East Asia 27 1.000
Lahu East Asia 6 1.000
Miaozu East Asia 10 1.000
Mongola East Asia 9 0.944
Naxi East Asia 8 1.000
Oroqen East Asia 8 1.000
She East Asia 8 1.000
Tu East Asia 10 1.000
Tujia East Asia 10 1.000
Xibo East Asia 7 0.929
Yakut East Asia 25 1.000
Yizu East Asia 10 1.000
Adygei Europe 16 0.656
Basque Europe 24 0.833
Bergamo Europe 13 0.577
French Europe 26 0.808
Orcadian Europe 15 0.733
Russian Europe 23 0.804
Sardinian Europe 27 0.667
Tuscan Europe 8 0.562
Bedouin Middle East 45 0.700
Druze Middle East 38 0.789
Mozabite Middle East 29 0.810
Palestinian Middle East 45 0.622
Melanesian Oceania 13 1.000
Papuan Oceania 16 1.000
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.084
Middle East0.0510.030
Europe0.0550.0310.042
Central-South Asia0.1290.0650.1010.009
East Asia0.2910.1660.2310.0730.029
Oceania0.3530.1940.2750.0960.0190.000
America0.2980.1730.2390.0710.0130.0020.002

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.000
Middle East0.1410.013
Europe0.0070.0040.000
Central-South Asia0.0000.0000.0000.254
East Asia0.0000.0000.0000.0000.316
Oceania0.0000.0000.0000.0001.0000.999
America0.0000.0000.0000.0001.0000.9930.937

Low P-value

High P-value

VariantIDSNP00000383
Variant release2.0
External IDrs3448 (dbSNP)
SequenceSEQ00000004_2.0
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