SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000385_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	23	0.022

Bedouin	Middle East	45	0.022

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.001
Middle East	0.002	0.007
Europe	0.001	0.002	0.000
Central-South Asia	0.001	0.002	0.000	0.000
East Asia	0.000	0.000	0.000	0.000	0.000
Oceania	0.001	0.001	0.000	0.000	0.000	0.000
America	0.000	0.001	0.000	0.000	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	0.340
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	1.000	0.967	1.000	1.000	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000385

Variant release

2.0

External ID

rs8179165 (dbSNP)

Sequence

SEQ00000004_2.0

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