SelenoDB: selenoproteins database

SelenoDB

Release 2.0

Chart

Variant Report for SNP00000389_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

G (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Japanese	East Asia	25	0.020
Tu	East Asia	10	0.050
Xibo	East Asia	7	0.071

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.000	0.000	0.000
Central-South Asia	0.000	0.000	0.000	0.000
East Asia	0.168	0.173	0.170	0.171	0.197
Oceania	0.000	0.000	0.000	0.000	0.113	0.000
America	0.000	0.000	0.000	0.000	0.006	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	0.865	0.000	0.787	0.780	0.003
Oceania	1.000	1.000	1.000	1.000	0.948	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000389

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

Chart

Search Species for Family

Advanced

© 2007-2024 SelenoDB
- A public source of selenium -